No. words: 703; after pruning: 677


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    6   -4.7 -4.7 (1,1:308)  205  8.05 0.67 0.67  BE495304Ta20P095G07P016E111F1_062.ab1        7   304 (39)  C BE495304Ta20P095G07P016E111R1_062.ab1   (57)   303     6 *
  Worst pair: offset 0 
LLR breakdown: discreps: -9.3 (<20 part: -9.3 (#=28), >20:0.0 (#=0); in HQ: -9.3, out HQ 0.0), match: 6.1  trail: -0.7  lead: -0.8  total: -4.7  205  8.05 0.67 0.67  BE495304Ta20P095G07P016E111F1_062.ab1        7   304 (39)  C BE495304Ta20P095G07P016E111R1_062.ab1   (57)   303     6 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-4.7       1        0

Gap   # merges  # failures
 size
 6       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  84 nodes

 44 str. conn. components

Path
    1  C BE495304Ta20P095G07P016E111R1_062.ab1   360 
  349    BE495304Ta20P095G07P016E111F1_062.ab1   298 
Contig length: old 394, new 394

Contig length: old 394, new 395
New start: 0 
I Change at: 65; seg lengths: entry 1, contig 0
S Change at: 326; seg lengths: entry 1, contig 1