No. words: 1228; after pruning: 1188


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.9 (1,1:603)  575  0.34 0.00 0.00  BE495325Ta20P068G06P019C101F1_093.ab1       18   604 (37)  C BE495325Ta20P068G06P019C101R1_093.ab1   (0)   587     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  290 nodes

 147 str. conn. components

Path
    1    BE495325Ta20P068G06P019C101F1_093.ab1     1 
  421  C BE495325Ta20P068G06P019C101R1_093.ab1   184 
  433    BE495325Ta20P068G06P019C101F1_093.ab1   433 
  441  C BE495325Ta20P068G06P019C101R1_093.ab1   164 
  469    BE495325Ta20P068G06P019C101F1_093.ab1   469 
  473  C BE495325Ta20P068G06P019C101R1_093.ab1   132 
  477    BE495325Ta20P068G06P019C101F1_093.ab1   477 
  481  C BE495325Ta20P068G06P019C101R1_093.ab1   124 
  529    BE495325Ta20P068G06P019C101F1_093.ab1   529 
  537  C BE495325Ta20P068G06P019C101R1_093.ab1    68 
  549    BE495325Ta20P068G06P019C101F1_093.ab1   549 
  565  C BE495325Ta20P068G06P019C101R1_093.ab1    40 
  598    BE495325Ta20P068G06P019C101F1_093.ab1   598 
Contig length: old 641, new 641

Contig length: old 641, new 641
New start: 0