No. words: 1175; after pruning: 1149


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.2 (1,1:454)  439  0.00 0.44 0.22  BE497169Ld01P103B05P103B111F1_012.ab1        1   455 (138)  C BE497169Ld01P103B05P103B111R1_012.ab1   (126)   456     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  220 nodes

 112 str. conn. components

Path
    1  C BE497169Ld01P103B05P103B111R1_012.ab1   582 
  200    BE497169Ld01P103B05P103B111F1_012.ab1    72 
  208  C BE497169Ld01P103B05P103B111R1_012.ab1   375 
  420    BE497169Ld01P103B05P103B111F1_012.ab1   292 
  428  C BE497169Ld01P103B05P103B111R1_012.ab1   155 
  448    BE497169Ld01P103B05P103B111F1_012.ab1   320 
  456  C BE497169Ld01P103B05P103B111R1_012.ab1   127 
  464    BE497169Ld01P103B05P103B111F1_012.ab1   336 
  468  C BE497169Ld01P103B05P103B111R1_012.ab1   115 
  496    BE497169Ld01P103B05P103B111F1_012.ab1   368 
  512  C BE497169Ld01P103B05P103B111R1_012.ab1    71 
  524    BE497169Ld01P103B05P103B111F1_012.ab1   396 
Contig length: old 720, new 721

Contig length: old 721, new 721
New start: 0