No. words: 1164; after pruning: 1138


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.9 (1,1:444)  442  0.00 0.00 0.00  BE497169Ld03P103B05P103B111F1_008.ab1        1   445 (148)  C BE497169Ld03P103B05P103B111R1_008.ab1   (126)   445     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  224 nodes

 114 str. conn. components

Path
    1  C BE497169Ld03P103B05P103B111R1_008.ab1   571 
  218    BE497169Ld03P103B05P103B111F1_008.ab1    92 
  222  C BE497169Ld03P103B05P103B111R1_008.ab1   350 
  406    BE497169Ld03P103B05P103B111F1_008.ab1   280 
  466  C BE497169Ld03P103B05P103B111R1_008.ab1   106 
  486    BE497169Ld03P103B05P103B111F1_008.ab1   360 
  506  C BE497169Ld03P103B05P103B111R1_008.ab1    66 
  514    BE497169Ld03P103B05P103B111F1_008.ab1   388 
  522  C BE497169Ld03P103B05P103B111R1_008.ab1    50 
  534    BE497169Ld03P103B05P103B111F1_008.ab1   408 
  542  C BE497169Ld03P103B05P103B111R1_008.ab1    30 
  546    BE497169Ld03P103B05P103B111F1_008.ab1   420 
Contig length: old 719, new 719

Contig length: old 719, new 719
New start: 0