No. words: 1225; after pruning: 1199


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.0 (1,1:450)  443  0.00 0.00 0.22  BE497169Ld08P103B05P103B111F1_029.ab1        1   451 (148)  C BE497169Ld08P103B05P103B111R1_029.ab1   (176)   450     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  224 nodes

 114 str. conn. components

Path
    1  C BE497169Ld08P103B05P103B111R1_029.ab1   626 
  456    BE497169Ld08P103B05P103B111F1_029.ab1   280 
  492  C BE497169Ld08P103B05P103B111R1_029.ab1   135 
  528    BE497169Ld08P103B05P103B111F1_029.ab1   352 
  536  C BE497169Ld08P103B05P103B111R1_029.ab1    91 
  540    BE497169Ld08P103B05P103B111F1_029.ab1   364 
  548  C BE497169Ld08P103B05P103B111R1_029.ab1    79 
  556    BE497169Ld08P103B05P103B111F1_029.ab1   380 
  572  C BE497169Ld08P103B05P103B111R1_029.ab1    55 
  576    BE497169Ld08P103B05P103B111F1_029.ab1   400 
  580  C BE497169Ld08P103B05P103B111R1_029.ab1    47 
  588    BE497169Ld08P103B05P103B111F1_029.ab1   412 
Contig length: old 774, new 775

Contig length: old 775, new 775
New start: 0