No. words: 1025; after pruning: 985


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.6 (1,1:497)  466  0.21 0.21 0.00  BE497804Tu02P067C06P067C121F1_078.ab1       16   498 (43)  C BE497804Tu02P067C06P067C121R1_078.ab1   (0)   484     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  238 nodes

 121 str. conn. components

Path
    1    BE497804Tu02P067C06P067C121F1_078.ab1     1 
   83  C BE497804Tu02P067C06P067C121R1_078.ab1   416 
   91    BE497804Tu02P067C06P067C121F1_078.ab1    91 
   99  C BE497804Tu02P067C06P067C121R1_078.ab1   400 
  143    BE497804Tu02P067C06P067C121F1_078.ab1   143 
  151  C BE497804Tu02P067C06P067C121R1_078.ab1   348 
  163    BE497804Tu02P067C06P067C121F1_078.ab1   163 
  191  C BE497804Tu02P067C06P067C121R1_078.ab1   308 
  235    BE497804Tu02P067C06P067C121F1_078.ab1   235 
  239  C BE497804Tu02P067C06P067C121R1_078.ab1   260 
  267    BE497804Tu02P067C06P067C121F1_078.ab1   267 
  271  C BE497804Tu02P067C06P067C121R1_078.ab1   228 
  287    BE497804Tu02P067C06P067C121F1_078.ab1   287 
  311  C BE497804Tu02P067C06P067C121R1_078.ab1   188 
  371    BE497804Tu02P067C06P067C121F1_078.ab1   371 
  379  C BE497804Tu02P067C06P067C121R1_078.ab1   120 
  407    BE497804Tu02P067C06P067C121F1_078.ab1   407 
  411  C BE497804Tu02P067C06P067C121R1_078.ab1    88 
  435    BE497804Tu02P067C06P067C121F1_078.ab1   435 
  439  C BE497804Tu02P067C06P067C121R1_078.ab1    60 
  455    BE497804Tu02P067C06P067C121F1_078.ab1   455 
  459  C BE497804Tu02P067C06P067C121R1_078.ab1    40 
  495    BE497804Tu02P067C06P067C121F1_078.ab1   495 
Contig length: old 541, new 541

Contig length: old 541, new 542
New start: 0 
I Change at: 25; seg lengths: entry 1, contig 0