No. words: 1698; after pruning: 1672


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    7    0.0 10.4 (1,1:750)  708  0.00 0.13 0.13  BE498786Ld05P103F05P103F111F1_094.ab1        8   751 (61)  C BE498786Ld05P103F05P103F111R1_094.ab1   (142)   744     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 7       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  366 nodes

 185 str. conn. components

Path
    1  C BE498786Ld05P103F05P103F111R1_094.ab1   886 
  160    BE498786Ld05P103F05P103F111F1_094.ab1    24 
  180  C BE498786Ld05P103F05P103F111R1_094.ab1   707 
  184    BE498786Ld05P103F05P103F111F1_094.ab1    48 
  212  C BE498786Ld05P103F05P103F111R1_094.ab1   675 
  216    BE498786Ld05P103F05P103F111F1_094.ab1    80 
  224  C BE498786Ld05P103F05P103F111R1_094.ab1   663 
  228    BE498786Ld05P103F05P103F111F1_094.ab1    92 
  256  C BE498786Ld05P103F05P103F111R1_094.ab1   631 
  260    BE498786Ld05P103F05P103F111F1_094.ab1   124 
  312  C BE498786Ld05P103F05P103F111R1_094.ab1   575 
  324    BE498786Ld05P103F05P103F111F1_094.ab1   188 
  336  C BE498786Ld05P103F05P103F111R1_094.ab1   551 
  500    BE498786Ld05P103F05P103F111F1_094.ab1   364 
  508  C BE498786Ld05P103F05P103F111R1_094.ab1   379 
  560    BE498786Ld05P103F05P103F111F1_094.ab1   424 
  576  C BE498786Ld05P103F05P103F111R1_094.ab1   311 
  628    BE498786Ld05P103F05P103F111F1_094.ab1   492 
  716  C BE498786Ld05P103F05P103F111R1_094.ab1   171 
  728    BE498786Ld05P103F05P103F111F1_094.ab1   592 
  744  C BE498786Ld05P103F05P103F111R1_094.ab1   143 
  768    BE498786Ld05P103F05P103F111F1_094.ab1   632 
  776  C BE498786Ld05P103F05P103F111R1_094.ab1   111 
  784    BE498786Ld05P103F05P103F111F1_094.ab1   648 
  788  C BE498786Ld05P103F05P103F111R1_094.ab1    99 
  800    BE498786Ld05P103F05P103F111F1_094.ab1   664 
  804  C BE498786Ld05P103F05P103F111R1_094.ab1    83 
  856    BE498786Ld05P103F05P103F111F1_094.ab1   720 
  860  C BE498786Ld05P103F05P103F111R1_094.ab1    27 
  868    BE498786Ld05P103F05P103F111F1_094.ab1   732 
Contig length: old 947, new 948

Contig length: old 948, new 948
New start: 0