No. words: 1632; after pruning: 1606


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    6    0.0 9.5 (1,1:658)  612  0.15 0.31 0.00  BE498786Ld06P103F05P103F111F1_092.ab1        8   658 (178)  C BE498786Ld06P103F05P103F111R1_092.ab1   (143)   653     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 6       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  320 nodes

 162 str. conn. components

Path
    1  C BE498786Ld06P103F05P103F111R1_092.ab1   796 
  161    BE498786Ld06P103F05P103F111F1_092.ab1    24 
  165  C BE498786Ld06P103F05P103F111R1_092.ab1   632 
  524    BE498786Ld06P103F05P103F111F1_092.ab1   386 
  604  C BE498786Ld06P103F05P103F111R1_092.ab1   193 
  636    BE498786Ld06P103F05P103F111F1_092.ab1   498 
  652  C BE498786Ld06P103F05P103F111R1_092.ab1   145 
  664    BE498786Ld06P103F05P103F111F1_092.ab1   526 
  728  C BE498786Ld06P103F05P103F111R1_092.ab1    69 
  732    BE498786Ld06P103F05P103F111F1_092.ab1   594 
  736  C BE498786Ld06P103F05P103F111R1_092.ab1    61 
  740    BE498786Ld06P103F05P103F111F1_092.ab1   602 
Contig length: old 973, new 974

Contig length: old 974, new 974
New start: 0