No. words: 1593; after pruning: 1567


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    7    0.0 9.7 (1,1:669)  618  0.15 0.15 0.30  BE498786Ld09P103F05P103F111F1_086.ab1        8   671 (123)  C BE498786Ld09P103F05P103F111R1_086.ab1   (136)   663     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 7       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  322 nodes

 163 str. conn. components

Path
    1  C BE498786Ld09P103F05P103F111R1_086.ab1   799 
  154    BE498786Ld09P103F05P103F111F1_086.ab1    24 
  158  C BE498786Ld09P103F05P103F111R1_086.ab1   642 
  357    BE498786Ld09P103F05P103F111F1_086.ab1   227 
  373  C BE498786Ld09P103F05P103F111R1_086.ab1   427 
  413    BE498786Ld09P103F05P103F111F1_086.ab1   283 
  421  C BE498786Ld09P103F05P103F111R1_086.ab1   379 
  537    BE498786Ld09P103F05P103F111F1_086.ab1   407 
  597  C BE498786Ld09P103F05P103F111R1_086.ab1   203 
  641    BE498786Ld09P103F05P103F111F1_086.ab1   511 
  649  C BE498786Ld09P103F05P103F111R1_086.ab1   151 
  677    BE498786Ld09P103F05P103F111F1_086.ab1   547 
  709  C BE498786Ld09P103F05P103F111R1_086.ab1    91 
  741    BE498786Ld09P103F05P103F111F1_086.ab1   611 
  757  C BE498786Ld09P103F05P103F111R1_086.ab1    43 
  761    BE498786Ld09P103F05P103F111F1_086.ab1   631 
  777  C BE498786Ld09P103F05P103F111R1_086.ab1    23 
  781    BE498786Ld09P103F05P103F111F1_086.ab1   651 
Contig length: old 923, new 924

Contig length: old 924, new 924
New start: 0