No. words: 1187; after pruning: 1161


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   11    0.0 10.5 (1,1:546)  517  0.00 0.19 0.19  BE499309At01P026F08P026B111F1_089.ab1        1   536 (54)  C BE499309At01P026F08P026B111R1_089.ab1   (50)   547    12 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
11       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  262 nodes

 133 str. conn. components

Path
    1  C BE499309At01P026F08P026B111R1_089.ab1   597 
   87    BE499309At01P026F08P026B111F1_089.ab1    36 
   91  C BE499309At01P026F08P026B111R1_089.ab1   507 
  171    BE499309At01P026F08P026B111F1_089.ab1   120 
  179  C BE499309At01P026F08P026B111R1_089.ab1   419 
  223    BE499309At01P026F08P026B111F1_089.ab1   172 
  243  C BE499309At01P026F08P026B111R1_089.ab1   355 
  283    BE499309At01P026F08P026B111F1_089.ab1   232 
  291  C BE499309At01P026F08P026B111R1_089.ab1   307 
  311    BE499309At01P026F08P026B111F1_089.ab1   260 
  323  C BE499309At01P026F08P026B111R1_089.ab1   275 
  475    BE499309At01P026F08P026B111F1_089.ab1   424 
  483  C BE499309At01P026F08P026B111R1_089.ab1   115 
  487    BE499309At01P026F08P026B111F1_089.ab1   436 
  511  C BE499309At01P026F08P026B111R1_089.ab1    87 
  519    BE499309At01P026F08P026B111F1_089.ab1   468 
  527  C BE499309At01P026F08P026B111R1_089.ab1    71 
  531    BE499309At01P026F08P026B111F1_089.ab1   480 
  535  C BE499309At01P026F08P026B111R1_089.ab1    63 
  539    BE499309At01P026F08P026B111F1_089.ab1   488 
  555  C BE499309At01P026F08P026B111R1_089.ab1    43 
  563    BE499309At01P026F08P026B111F1_089.ab1   512 
Contig length: old 640, new 641

Contig length: old 641, new 641
New start: 0