No. words: 1161; after pruning: 1135


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.8 (1,1:531)  523  0.00 0.00 0.00  BE499309At02P026F08P026B111F1_087.ab1        1   532 (60)  C BE499309At02P026F08P026B111R1_087.ab1   (37)   532     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  268 nodes

 136 str. conn. components

Path
    1  C BE499309At02P026F08P026B111R1_087.ab1   569 
  445    BE499309At02P026F08P026B111F1_087.ab1   408 
  453  C BE499309At02P026F08P026B111R1_087.ab1   117 
  473    BE499309At02P026F08P026B111F1_087.ab1   436 
  485  C BE499309At02P026F08P026B111R1_087.ab1    85 
  493    BE499309At02P026F08P026B111F1_087.ab1   456 
  497  C BE499309At02P026F08P026B111R1_087.ab1    73 
  517    BE499309At02P026F08P026B111F1_087.ab1   480 
Contig length: old 629, new 629

Contig length: old 629, new 629
New start: 0