No. words: 1169; after pruning: 1143


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    6    0.0 10.2 (1,1:545)  512  0.37 0.37 0.19  BE499309Tu01P026F08P026B111F1_066.ab1        1   540 (48)  C BE499309Tu01P026F08P026B111R1_066.ab1   (34)   547     7 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 6       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  260 nodes

 132 str. conn. components

Path
    1  C BE499309Tu01P026F08P026B111R1_066.ab1   581 
  166    BE499309Tu01P026F08P026B111F1_066.ab1   130 
  174  C BE499309Tu01P026F08P026B111R1_066.ab1   408 
  302    BE499309Tu01P026F08P026B111F1_066.ab1   266 
  314  C BE499309Tu01P026F08P026B111R1_066.ab1   268 
  406    BE499309Tu01P026F08P026B111F1_066.ab1   370 
  422  C BE499309Tu01P026F08P026B111R1_066.ab1   160 
  458    BE499309Tu01P026F08P026B111F1_066.ab1   422 
  466  C BE499309Tu01P026F08P026B111R1_066.ab1   116 
  474    BE499309Tu01P026F08P026B111F1_066.ab1   438 
  486  C BE499309Tu01P026F08P026B111R1_066.ab1    96 
  506    BE499309Tu01P026F08P026B111F1_066.ab1   470 
  514  C BE499309Tu01P026F08P026B111R1_066.ab1    68 
  530    BE499309Tu01P026F08P026B111F1_066.ab1   494 
Contig length: old 623, new 624

Contig length: old 624, new 624
New start: 0