No. words: 1176; after pruning: 1136


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 6.7 (1,1:540)  517  0.18 0.18 0.37  BE499309Tu02P026F08P026B111F1_095.ab1        2   542 (50)  C BE499309Tu02P026F08P026B111R1_095.ab1   (44)   540     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  258 nodes

 131 str. conn. components

Path
    1  C BE499309Tu02P026F08P026B111R1_095.ab1   584 
   83    BE499309Tu02P026F08P026B111F1_095.ab1    39 
   91  C BE499309Tu02P026F08P026B111R1_095.ab1   494 
  395    BE499309Tu02P026F08P026B111F1_095.ab1   351 
  447  C BE499309Tu02P026F08P026B111R1_095.ab1   138 
  471    BE499309Tu02P026F08P026B111F1_095.ab1   427 
  503  C BE499309Tu02P026F08P026B111R1_095.ab1    82 
  538    BE499309Tu02P026F08P026B111F1_095.ab1   494 
Contig length: old 635, new 636

Contig length: old 636, new 636
New start: 0