No. words: 1872; after pruning: 1820


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.3 (1,1:318)  307  0.00 0.31 0.00  BE499968Ld01P026G08P026C111F1_009.ab1        2   319 (140)  C BE499968Ld01P026G08P026C111R1_009.ab1   (125)   319     1 *
Merge:(0)    0    0.0 5.1 (1,1:314)  297  0.63 0.00 0.32  BE499968Ld01P026G08P026C111F1_090.ab1        1   315 (187)  C BE499968Ld01P026G08P026C111R1_090.ab1   (153)   314     1 *
 -125  -152  458 501    84     S -125- -58, E 375- 458
Fail: (1)   84    0.0 4.0 (2,2:0)  341  1.87 0.00 0.27  BE499968Ld01P026G08P026C111F1_090.ab1        1   375 (127)    BE499968Ld01P026G08P026C111F1_009.ab1        2   375 (84)  

Pass: 3
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        1

Gap   # merges  # failures
 size
 0       2        0
84       0        1

Offset
  0       3 
  1       3 

Pass 4
             Gap  Score    
 -125  -152  458 501    84     S -125- -58, E 375- 458
Fail: (1)   84    0.0 4.0 (2,2:0)  341  1.87 0.00 0.27  BE499968Ld01P026G08P026C111F1_090.ab1        1   375 (127)    BE499968Ld01P026G08P026C111F1_009.ab1        2   375 (84)  
 -458  -470  125 183    424     I -370- 53
Fail: (1)  423    0.0 1.9 (2,2:318)   87  0.00 0.00 0.00  BE499968Ld01P026G08P026C111R1_090.ab1      368   455 (12)    BE499968Ld01P026G08P026C111F1_009.ab1      372   459 (0)  

Pass: 4
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       0        2

Gap   # merges  # failures
 size
84       0        1
423       0        1

Offset
  0       4 
  1       2 

Read equivalence class histogram:
    1    4

Chimera merges: 


Contig 2:  158 nodes

 81 str. conn. components

Path
    1  C BE499968Ld01P026G08P026C111R1_009.ab1   444 
  335    BE499968Ld01P026G08P026C111F1_009.ab1   210 
Contig length: old 584, new 584

Contig 1:  152 nodes

 78 str. conn. components

Path
    1  C BE499968Ld01P026G08P026C111R1_090.ab1   467 
  339    BE499968Ld01P026G08P026C111F1_090.ab1   186 
  343  C BE499968Ld01P026G08P026C111R1_090.ab1   125 
  419    BE499968Ld01P026G08P026C111F1_090.ab1   266 
  427  C BE499968Ld01P026G08P026C111R1_090.ab1    41 
  435    BE499968Ld01P026G08P026C111F1_090.ab1   282 
  443  C BE499968Ld01P026G08P026C111R1_090.ab1    25 
  455    BE499968Ld01P026G08P026C111F1_090.ab1   302 
Contig length: old 654, new 655

Contig length: old 584, new 584
New start: 0 

Contig length: old 655, new 655
New start: 0