No. words: 827; after pruning: 801


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Rjct: (2)    0   -5.0 -5.0 (1,1:410)  196  8.75 0.00 0.34  BE499982As02P067F06P067F121F2_088.ab1        1   297 (0)  C BE499982As02P067F06P067F121R2_088.ab1   (120)   410   115 *
  Worst pair: offset 1 
LLR breakdown: discreps: -11.1 (<20 part: -11.1 (#=27), >20:0.0 (#=0); in HQ: -11.1, out HQ 0.0), match: 6.0  total: -5.1  196  8.75 0.00 0.34  BE499982As02P067F06P067F121F2_088.ab1        1   297 (0)  C BE499982As02P067F06P067F121R2_088.ab1   (120)   410   115 *

Pass: 4
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-5.0       0        1

Gap   # merges  # failures
 size
 0       0        1

Offset
  1       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 2:  2 nodes

 2 str. conn. components

Path
    1    BE499982As02P067F06P067F121R2_088.ab1     1 
Contig length: old 530, new 530

Contig 1:  2 nodes

 2 str. conn. components

Path
    1    BE499982As02P067F06P067F121F2_088.ab1     1 
Contig length: old 297, new 297