No. words: 825; after pruning: 799


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -0.8 -0.8 (1,1:479)  128  7.41 0.53 0.00  BE499982At01P067F06P067F121F2_086.ab1        1   189 (0)  C BE499982At01P067F06P067F121R2_086.ab1   (156)   480   291 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-0.8       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  52 nodes

 28 str. conn. components

Path
    1  C BE499982At01P067F06P067F121R2_086.ab1   636 
  225    BE499982At01P067F06P067F121F2_086.ab1    68 
  229  C BE499982At01P067F06P067F121R2_086.ab1   408 
  306    BE499982At01P067F06P067F121F2_086.ab1   149 
  328  C BE499982At01P067F06P067F121R2_086.ab1   309 
  336    BE499982At01P067F06P067F121F2_086.ab1   179 
  340  C BE499982At01P067F06P067F121R2_086.ab1   297 
Contig length: old 636, new 636

Contig length: old 636, new 636
New start: 0 
S Change at: 182; seg lengths: entry 1, contig 1
S Change at: 188; seg lengths: entry 1, contig 1
S Change at: 273; seg lengths: entry 1, contig 1