No. words: 1120; after pruning: 1094


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.9 (1,1:391)  376  0.00 0.25 0.51  BE499982Ld03P067F06P067F121F1_067.ab1        1   393 (177)  C BE499982Ld03P067F06P067F121R1_067.ab1   (158)   392     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  188 nodes

 96 str. conn. components

Path
    1  C BE499982Ld03P067F06P067F121R1_067.ab1   550 
  349    BE499982Ld03P067F06P067F121F1_067.ab1   190 
  381  C BE499982Ld03P067F06P067F121R1_067.ab1   170 
  433    BE499982Ld03P067F06P067F121F1_067.ab1   274 
Contig length: old 728, new 729

Contig length: old 729, new 729
New start: 0