No. words: 1306; after pruning: 1267


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.1 (1,1:279)  253  0.00 1.08 0.00  BE500083Ld03P016A06A12F1_048.scf        1   279 (149)  C BE500083Ld03P016A06A12R1_048.ab1   (168)   282     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    1
    2    1

Chimera merges: 


Contig 1:  130 nodes

 67 str. conn. components

Path
    1  C BE500083Ld03P016A06A12R1_048.ab1   450 
  186    BE500083Ld03P016A06A12F1_048.scf    16 
  194  C BE500083Ld03P016A06A12R1_048.ab1   257 
  210    BE500083Ld03P016A06A12F1_048.scf    39 
Contig length: old 598, new 599

Contig length: old 599, new 599
New start: 0