No. words: 1314; after pruning: 1275


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.2 (1,1:280)  258  0.00 0.71 0.00  BE500083Ld05P016A06A12F1_044.scf        1   280 (150)  C BE500083Ld05P016A06A12R1_044.ab1   (172)   282     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    1
    2    1

Chimera merges: 


Contig 1:  134 nodes

 69 str. conn. components

Path
    1  C BE500083Ld05P016A06A12R1_044.ab1   454 
  187    BE500083Ld05P016A06A12F1_044.scf    14 
  195  C BE500083Ld05P016A06A12R1_044.ab1   260 
  218    BE500083Ld05P016A06A12F1_044.scf    44 
Contig length: old 603, new 604

Contig length: old 604, new 604
New start: 0