No. words: 1316; after pruning: 1277


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.4 (1,1:284)  250  0.00 1.40 0.35  BE500083Ld09P016A06A12F1_036.scf        1   285 (143)  C BE500083Ld09P016A06A12R1_036.ab1   (172)   288     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    1
    2    1

Chimera merges: 


Contig 1:  128 nodes

 66 str. conn. components

Path
    1  C BE500083Ld09P016A06A12R1_036.ab1   460 
  214    BE500083Ld09P016A06A12F1_036.scf    38 
Contig length: old 603, new 604

Contig length: old 604, new 604
New start: 0