No. words: 441; after pruning: 415


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    1   -3.7 -3.7 (1,1:152)  110  3.95 1.32 1.32  BE500083Ta16P052D07P016A121F1_002.ab1        2   153 (74)  C BE500083Ta16P052D07P016A121R1_002.ab1   (61)   153     2 *
  Worst pair: offset 0 
LLR breakdown: discreps: -4.0 (<20 part: -4.0 (#=10), >20:0.0 (#=0); in HQ: -4.0, out HQ 0.0), match: 3.2  trail: -0.7  lead: -2.3  total: -3.8  110  3.95 1.32 1.32  BE500083Ta16P052D07P016A121F1_002.ab1        2   153 (74)  C BE500083Ta16P052D07P016A121R1_002.ab1   (61)   153     2 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-3.7       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  52 nodes

 28 str. conn. components

Path
    1  C BE500083Ta16P052D07P016A121R1_002.ab1   214 
  120    BE500083Ta16P052D07P016A121F1_002.ab1    58 
  124  C BE500083Ta16P052D07P016A121R1_002.ab1    91 
  128    BE500083Ta16P052D07P016A121F1_002.ab1    66 
  147  C BE500083Ta16P052D07P016A121R1_002.ab1    68 
  151    BE500083Ta16P052D07P016A121F1_002.ab1    89 
  155  C BE500083Ta16P052D07P016A121R1_002.ab1    60 
  171    BE500083Ta16P052D07P016A121F1_002.ab1   109 
Contig length: old 288, new 289

Contig length: old 289, new 289
New start: 0