No. words: 1162; after pruning: 1136


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.5 (1,1:582)  557  0.18 0.00 0.00  BE500759Ld01P078C03P078C091F1_019.ab1       15   583 (10)  C BE500759Ld01P078C03P078C091R1_019.ab1   (0)   569     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  284 nodes

 144 str. conn. components

Path
    1    BE500759Ld01P078C03P078C091F1_019.ab1     1 
   26  C BE500759Ld01P078C03P078C091R1_019.ab1   558 
   39    BE500759Ld01P078C03P078C091F1_019.ab1    39 
   55  C BE500759Ld01P078C03P078C091R1_019.ab1   529 
   59    BE500759Ld01P078C03P078C091F1_019.ab1    59 
  403  C BE500759Ld01P078C03P078C091R1_019.ab1   181 
  451    BE500759Ld01P078C03P078C091F1_019.ab1   451 
  455  C BE500759Ld01P078C03P078C091R1_019.ab1   129 
  491    BE500759Ld01P078C03P078C091F1_019.ab1   491 
  499  C BE500759Ld01P078C03P078C091R1_019.ab1    85 
  535    BE500759Ld01P078C03P078C091F1_019.ab1   535 
  551  C BE500759Ld01P078C03P078C091R1_019.ab1    33 
  559    BE500759Ld01P078C03P078C091F1_019.ab1   559 
  571  C BE500759Ld01P078C03P078C091R1_019.ab1    13 
  575    BE500759Ld01P078C03P078C091F1_019.ab1   575 
Contig length: old 593, new 593

Contig length: old 593, new 593
New start: 0