No. words: 1221; after pruning: 1195


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.1 (1,1:600)  585  0.33 0.00 0.00  BE500759Ld03P078C03P078C091F1_032.ab1        1   601 (13)  C BE500759Ld03P078C03P078C091R1_032.ab1   (6)   601     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  298 nodes

 151 str. conn. components

Path
    1  C BE500759Ld03P078C03P078C091R1_032.ab1   607 
   14    BE500759Ld03P078C03P078C091F1_032.ab1     8 
   38  C BE500759Ld03P078C03P078C091R1_032.ab1   570 
   54    BE500759Ld03P078C03P078C091F1_032.ab1    48 
  142  C BE500759Ld03P078C03P078C091R1_032.ab1   466 
  162    BE500759Ld03P078C03P078C091F1_032.ab1   156 
  222  C BE500759Ld03P078C03P078C091R1_032.ab1   386 
  254    BE500759Ld03P078C03P078C091F1_032.ab1   248 
  334  C BE500759Ld03P078C03P078C091R1_032.ab1   274 
  338    BE500759Ld03P078C03P078C091F1_032.ab1   332 
  354  C BE500759Ld03P078C03P078C091R1_032.ab1   254 
  398    BE500759Ld03P078C03P078C091F1_032.ab1   392 
  478  C BE500759Ld03P078C03P078C091R1_032.ab1   130 
  510    BE500759Ld03P078C03P078C091F1_032.ab1   504 
  514  C BE500759Ld03P078C03P078C091R1_032.ab1    94 
  554    BE500759Ld03P078C03P078C091F1_032.ab1   548 
  566  C BE500759Ld03P078C03P078C091R1_032.ab1    42 
  574    BE500759Ld03P078C03P078C091F1_032.ab1   568 
  582  C BE500759Ld03P078C03P078C091R1_032.ab1    26 
  594    BE500759Ld03P078C03P078C091F1_032.ab1   588 
Contig length: old 620, new 620

Contig length: old 620, new 620
New start: 0