No. words: 1414; after pruning: 1388


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.4 (1,1:586)  566  0.68 0.00 0.00  BE500759Ld05P078C03P078C091F1_028.ab1        1   587 (110)  C BE500759Ld05P078C03P078C091R1_028.ab1   (130)   587     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  286 nodes

 145 str. conn. components

Path
    1  C BE500759Ld05P078C03P078C091R1_028.ab1   717 
  142    BE500759Ld05P078C03P078C091F1_028.ab1    12 
  162  C BE500759Ld05P078C03P078C091R1_028.ab1   556 
  186    BE500759Ld05P078C03P078C091F1_028.ab1    56 
  222  C BE500759Ld05P078C03P078C091R1_028.ab1   496 
  226    BE500759Ld05P078C03P078C091F1_028.ab1    96 
  246  C BE500759Ld05P078C03P078C091R1_028.ab1   472 
  302    BE500759Ld05P078C03P078C091F1_028.ab1   172 
  634  C BE500759Ld05P078C03P078C091R1_028.ab1    84 
  642    BE500759Ld05P078C03P078C091F1_028.ab1   512 
  646  C BE500759Ld05P078C03P078C091R1_028.ab1    72 
  650    BE500759Ld05P078C03P078C091F1_028.ab1   520 
  658  C BE500759Ld05P078C03P078C091R1_028.ab1    60 
  670    BE500759Ld05P078C03P078C091F1_028.ab1   540 
Contig length: old 827, new 827

Contig length: old 827, new 827
New start: 0