No. words: 1910; after pruning: 1871


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 12.5 (1,1:643)  605  0.78 0.00 0.31  BE517709Sn26P067E04P101F071F1_024.ab1        2   644 (51)  C BE517709Sn26P067E04P101F071R1_024.ab1   (47)   641     1 *
Merge:(0)    0    0.0 10.8 (2,1:597)  503  0.95 0.00 0.00  BE517709Sn26P067E04P101F071R1_024.ab1       47   573 (115)    BE517709Sn26P067E04P101F071R1_056.ab1        1   527 (0) *

Pass: 3
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       1        0
 1       1        0

Offset
  0       1 
  1       2 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    3    1

Chimera merges: 


Contig 1:  810 nodes

 381 str. conn. components

Path
    1  C BE517709Sn26P067E04P101F071F1_024.ab1   695 
  278    BE517709Sn26P067E04P101F071R1_024.ab1   226 
  302  C BE517709Sn26P067E04P101F071F1_024.ab1   394 
  478    BE517709Sn26P067E04P101F071R1_024.ab1   426 
  510  C BE517709Sn26P067E04P101F071F1_024.ab1   186 
  546    BE517709Sn26P067E04P101F071R1_024.ab1   494 
Contig length: old 739, new 740

Contig length: old 740, new 740
New start: 0