No. words: 1397; after pruning: 1358


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.7 (1,1:513)  481  1.17 0.00 0.19  BE517709Sn29P067E04P101F071F1_019.ab1        1   514 (99)  C BE517709Sn29P067E04P101F071R1_019.ab1   (128)   513     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    1
    2    1

Chimera merges: 


Contig 1:  244 nodes

 124 str. conn. components

Path
    1  C BE517709Sn29P067E04P101F071R1_019.ab1   641 
  342    BE517709Sn29P067E04P101F071F1_019.ab1   215 
  346  C BE517709Sn29P067E04P101F071R1_019.ab1   296 
  354    BE517709Sn29P067E04P101F071F1_019.ab1   227 
  358  C BE517709Sn29P067E04P101F071R1_019.ab1   284 
  374    BE517709Sn29P067E04P101F071F1_019.ab1   247 
  386  C BE517709Sn29P067E04P101F071R1_019.ab1   256 
  410    BE517709Sn29P067E04P101F071F1_019.ab1   283 
  418  C BE517709Sn29P067E04P101F071R1_019.ab1   224 
  442    BE517709Sn29P067E04P101F071F1_019.ab1   315 
  470  C BE517709Sn29P067E04P101F071R1_019.ab1   172 
  474    BE517709Sn29P067E04P101F071F1_019.ab1   347 
  554  C BE517709Sn29P067E04P101F071R1_019.ab1    88 
  558    BE517709Sn29P067E04P101F071F1_019.ab1   431 
Contig length: old 740, new 740

Contig length: old 740, new 740
New start: 0