No. words: 1122; after pruning: 1096


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.1 (1,1:460)  429  1.52 0.00 0.00  BE517709Sn32P101C07P067E101F1_018.ab1        1   461 (146)  C BE517709Sn32P101C07P067E101R1_018.ab1   (54)   461     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  210 nodes

 107 str. conn. components

Path
    1  C BE517709Sn32P101C07P067E101R1_018.ab1   515 
  227    BE517709Sn32P101C07P067E101F1_018.ab1   173 
  235  C BE517709Sn32P101C07P067E101R1_018.ab1   281 
  363    BE517709Sn32P101C07P067E101F1_018.ab1   309 
  379  C BE517709Sn32P101C07P067E101R1_018.ab1   137 
  403    BE517709Sn32P101C07P067E101F1_018.ab1   349 
  419  C BE517709Sn32P101C07P067E101R1_018.ab1    97 
  471    BE517709Sn32P101C07P067E101F1_018.ab1   417 
  479  C BE517709Sn32P101C07P067E101R1_018.ab1    37 
  483    BE517709Sn32P101C07P067E101F1_018.ab1   429 
Contig length: old 661, new 661

Contig length: old 661, new 661
New start: 0