No. words: 1225; after pruning: 1199


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 12.2 (1,1:568)  550  0.00 0.00 0.00  BE517709Ta11P101C07P067E101F1_005.ab1        3   569 (48)  C BE517709Ta11P101C07P067E101R1_005.ab1   (41)   567     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  286 nodes

 145 str. conn. components

Path
    1  C BE517709Ta11P101C07P067E101R1_005.ab1   608 
  373    BE517709Ta11P101C07P067E101F1_005.ab1   334 
  377  C BE517709Ta11P101C07P067E101R1_005.ab1   232 
  389    BE517709Ta11P101C07P067E101F1_005.ab1   350 
  397  C BE517709Ta11P101C07P067E101R1_005.ab1   212 
  489    BE517709Ta11P101C07P067E101F1_005.ab1   450 
  497  C BE517709Ta11P101C07P067E101R1_005.ab1   112 
  517    BE517709Ta11P101C07P067E101F1_005.ab1   478 
  521  C BE517709Ta11P101C07P067E101R1_005.ab1    88 
  529    BE517709Ta11P101C07P067E101F1_005.ab1   490 
  541  C BE517709Ta11P101C07P067E101R1_005.ab1    68 
  549    BE517709Ta11P101C07P067E101F1_005.ab1   510 
  597  C BE517709Ta11P101C07P067E101R1_005.ab1    12 
  601    BE517709Ta11P101C07P067E101F1_005.ab1   562 
Contig length: old 656, new 656

Contig length: old 656, new 656
New start: 0