No. words: 1199; after pruning: 1173


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.3 (1,1:555)  539  0.00 0.00 0.00  BE517709Ta12P101C07P067E101F1_006.ab1        1   556 (57)  C BE517709Ta12P101C07P067E101R1_006.ab1   (30)   556     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  280 nodes

 142 str. conn. components

Path
    1  C BE517709Ta12P101C07P067E101R1_006.ab1   586 
  122    BE517709Ta12P101C07P067E101F1_006.ab1    92 
  126  C BE517709Ta12P101C07P067E101R1_006.ab1   461 
  158    BE517709Ta12P101C07P067E101F1_006.ab1   128 
  162  C BE517709Ta12P101C07P067E101R1_006.ab1   425 
  210    BE517709Ta12P101C07P067E101F1_006.ab1   180 
  218  C BE517709Ta12P101C07P067E101R1_006.ab1   369 
  230    BE517709Ta12P101C07P067E101F1_006.ab1   200 
  234  C BE517709Ta12P101C07P067E101R1_006.ab1   353 
  258    BE517709Ta12P101C07P067E101F1_006.ab1   228 
  266  C BE517709Ta12P101C07P067E101R1_006.ab1   321 
  346    BE517709Ta12P101C07P067E101F1_006.ab1   316 
  362  C BE517709Ta12P101C07P067E101R1_006.ab1   225 
  374    BE517709Ta12P101C07P067E101F1_006.ab1   344 
  382  C BE517709Ta12P101C07P067E101R1_006.ab1   205 
  390    BE517709Ta12P101C07P067E101F1_006.ab1   360 
  406  C BE517709Ta12P101C07P067E101R1_006.ab1   181 
  454    BE517709Ta12P101C07P067E101F1_006.ab1   424 
  482  C BE517709Ta12P101C07P067E101R1_006.ab1   105 
  510    BE517709Ta12P101C07P067E101F1_006.ab1   480 
  526  C BE517709Ta12P101C07P067E101R1_006.ab1    61 
  538    BE517709Ta12P101C07P067E101F1_006.ab1   508 
  562  C BE517709Ta12P101C07P067E101R1_006.ab1    25 
  566    BE517709Ta12P101C07P067E101F1_006.ab1   536 
  578  C BE517709Ta12P101C07P067E101R1_006.ab1     9 
  582    BE517709Ta12P101C07P067E101F1_006.ab1   552 
Contig length: old 643, new 643

Contig length: old 643, new 643
New start: 0