No. words: 1238; after pruning: 1212


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 12.1 (1,1:581)  560  0.00 0.00 0.17  BE517709Ta16P101C07P067E101F1_002.ab1        3   582 (36)  C BE517709Ta16P101C07P067E101R1_002.ab1   (41)   579     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  290 nodes

 147 str. conn. components

Path
    1  C BE517709Ta16P101C07P067E101R1_002.ab1   620 
  173    BE517709Ta16P101C07P067E101F1_002.ab1   134 
  181  C BE517709Ta16P101C07P067E101R1_002.ab1   440 
  389    BE517709Ta16P101C07P067E101F1_002.ab1   350 
  397  C BE517709Ta16P101C07P067E101R1_002.ab1   224 
  469    BE517709Ta16P101C07P067E101F1_002.ab1   430 
  481  C BE517709Ta16P101C07P067E101R1_002.ab1   140 
  513    BE517709Ta16P101C07P067E101F1_002.ab1   474 
  521  C BE517709Ta16P101C07P067E101R1_002.ab1   100 
  529    BE517709Ta16P101C07P067E101F1_002.ab1   490 
  541  C BE517709Ta16P101C07P067E101R1_002.ab1    80 
  553    BE517709Ta16P101C07P067E101F1_002.ab1   514 
  557  C BE517709Ta16P101C07P067E101R1_002.ab1    64 
  565    BE517709Ta16P101C07P067E101F1_002.ab1   526 
Contig length: old 656, new 657

Contig length: old 657, new 657
New start: 0