No. words: 1222; after pruning: 1196


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.6 (1,1:565)  549  0.00 0.00 0.00  BE517709Td09P101C07P067E101F1_007.ab1        1   566 (48)  C BE517709Td09P101C07P067E101R1_007.ab1   (42)   566     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  284 nodes

 144 str. conn. components

Path
    1  C BE517709Td09P101C07P067E101R1_007.ab1   608 
   98    BE517709Td09P101C07P067E101F1_007.ab1    56 
  102  C BE517709Td09P101C07P067E101R1_007.ab1   507 
  138    BE517709Td09P101C07P067E101F1_007.ab1    96 
  142  C BE517709Td09P101C07P067E101R1_007.ab1   467 
  174    BE517709Td09P101C07P067E101F1_007.ab1   132 
  182  C BE517709Td09P101C07P067E101R1_007.ab1   427 
  198    BE517709Td09P101C07P067E101F1_007.ab1   156 
  202  C BE517709Td09P101C07P067E101R1_007.ab1   407 
  222    BE517709Td09P101C07P067E101F1_007.ab1   180 
  234  C BE517709Td09P101C07P067E101R1_007.ab1   375 
  246    BE517709Td09P101C07P067E101F1_007.ab1   204 
  250  C BE517709Td09P101C07P067E101R1_007.ab1   359 
  274    BE517709Td09P101C07P067E101F1_007.ab1   232 
  282  C BE517709Td09P101C07P067E101R1_007.ab1   327 
  354    BE517709Td09P101C07P067E101F1_007.ab1   312 
  366  C BE517709Td09P101C07P067E101R1_007.ab1   243 
  390    BE517709Td09P101C07P067E101F1_007.ab1   348 
  398  C BE517709Td09P101C07P067E101R1_007.ab1   211 
  430    BE517709Td09P101C07P067E101F1_007.ab1   388 
  438  C BE517709Td09P101C07P067E101R1_007.ab1   171 
  446    BE517709Td09P101C07P067E101F1_007.ab1   404 
  458  C BE517709Td09P101C07P067E101R1_007.ab1   151 
  470    BE517709Td09P101C07P067E101F1_007.ab1   428 
  478  C BE517709Td09P101C07P067E101R1_007.ab1   131 
  486    BE517709Td09P101C07P067E101F1_007.ab1   444 
  498  C BE517709Td09P101C07P067E101R1_007.ab1   111 
  506    BE517709Td09P101C07P067E101F1_007.ab1   464 
  542  C BE517709Td09P101C07P067E101R1_007.ab1    67 
  550    BE517709Td09P101C07P067E101F1_007.ab1   508 
  594  C BE517709Td09P101C07P067E101R1_007.ab1    15 
  598    BE517709Td09P101C07P067E101F1_007.ab1   556 
Contig length: old 656, new 656

Contig length: old 656, new 656
New start: 0