No. words: 1828; after pruning: 1776


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   87    0.0 7.6 (1,1:-2)  345  0.29 0.00 0.00  BE517719Ld05P067D04P067D101R1_041.ab1        1   349 (87)    BE517719Ld05P067D04P067D101R1_076.ab1        3   351 (126)  
Merge:(0)   89    0.0 7.5 (1,1:-24)  337  0.00 0.00 0.00  BE517719Ld05P067D04P067D101F1_041.ab1        1   337 (128)    BE517719Ld05P067D04P067D101F1_076.ab1       25   361 (89)  
Merge:(0)    6    0.0 6.2 (2,2:277)  280  0.00 0.00 0.00  BE517719Ld05P067D04P067D101F1_041.ab1        1   280 (185)  C BE517719Ld05P067D04P067D101R1_076.ab1   (197)   280     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       3        0

Gap   # merges  # failures
 size
 6       1        0
87       1        0
89       1        0

Offset
  0       4 
  1       2 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  896 nodes

 188 str. conn. components

Path
    1  C BE517719Ld05P067D04P067D101R1_076.ab1   477 
  378    BE517719Ld05P067D04P067D101F1_076.ab1   205 
  481    BE517719Ld05P067D04P067D101F1_041.ab1   284 
Contig length: old 662, new 662

Contig length: old 662, new 662
New start: 0