No. words: 1794; after pruning: 1742


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.2 (1,1:279)  280  0.00 0.00 0.00  BE517719Ld06P067D04P067D101F1_074.ab1        1   280 (173)  C BE517719Ld06P067D04P067D101R1_074.ab1   (167)   280     1 *
Merge:(0)    0    0.0 6.0 (1,1:273)  269  0.00 0.36 0.00  BE517719Ld06P067D04P067D101F1_039.ab1        1   274 (167)  C BE517719Ld06P067D04P067D101R1_039.ab1   (178)   275     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       1 
  1       1 

Pass 4
             Gap  Score    
 -452  -451  167 168    401     I -334- 66
Fail: (1)  401    0.0 2.6 (2,2:272)  117  0.00 0.00 0.00  BE517719Ld06P067D04P067D101R1_039.ab1      337   453 (0)    BE517719Ld06P067D04P067D101F1_074.ab1      336   452 (1)  

Pass: 4
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       0        1

Gap   # merges  # failures
 size
401       0        1

Offset
  0       1 
  1       1 

Read equivalence class histogram:
    2    2

Chimera merges: 


Contig 2:  142 nodes

 73 str. conn. components

Path
    1  C BE517719Ld06P067D04P067D101R1_074.ab1   447 
  347    BE517719Ld06P067D04P067D101F1_074.ab1   180 
Contig length: old 620, new 620

Contig 1:  134 nodes

 69 str. conn. components

Path
    1  C BE517719Ld06P067D04P067D101R1_039.ab1   453 
  339    BE517719Ld06P067D04P067D101F1_039.ab1   160 
Contig length: old 620, new 620

Contig length: old 620, new 620
New start: 0 

Contig length: old 620, new 620
New start: 0