No. words: 1822; after pruning: 1770


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    
Merge:(0)    0    0.0 5.9 (1,1:268)  268  0.00 0.00 0.00  BE517719Ld08P067D04P067D101R1_035.ab1        1   269 (187)  C BE517719Ld08P067D04P067D101F1_070.ab1   (158)   269     1 *

Pass: 1
#reads  #contigs (not counting singlets)
    1      2
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.1 (2,1:-9)  455  0.00 0.00 0.00  BE517719Ld08P067D04P067D101R1_035.ab1        1   456 (0)    BE517719Ld08P067D04P067D101R1_070.ab1       10   465 (11) *
Merge:(0)    9    0.0 9.5 (3,1:295)  426  0.00 0.00 0.00  BE517719Ld08P067D04P067D101F1_070.ab1        1   427 (0)    BE517719Ld08P067D04P067D101F1_035.ab1       28   454 (9) *

Pass: 3
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       1        0
 9       1        0

Offset
  0       3 
  1       2 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  984 nodes

 296 str. conn. components

Path
    1  C BE517719Ld08P067D04P067D101F1_035.ab1   463 
  334    BE517719Ld08P067D04P067D101R1_035.ab1   167 
  355  C BE517719Ld08P067D04P067D101F1_070.ab1    82 
  357    BE517719Ld08P067D04P067D101R1_070.ab1   199 
Contig length: old 634, new 634

Contig length: old 634, new 634
New start: 0