No. words: 1804; after pruning: 1752


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.2 (1,1:278)  278  0.00 0.00 0.00  BE517719Ld09P067D04P067D101F1_033.ab1        1   279 (157)  C BE517719Ld09P067D04P067D101R1_033.ab1   (187)   279     1 *
Merge:(0)    0    0.0 6.1 (1,1:277)  278  0.00 0.00 0.00  BE517719Ld09P067D04P067D101F1_068.ab1        1   278 (148)  C BE517719Ld09P067D04P067D101R1_068.ab1   (198)   278     1 *
Fail: (1)  148  -10.3 4.2 (2,2:10)  457  0.22 0.22 0.00  BE517719Ld09P067D04P067D101R1_033.ab1        2   466 (0)    BE517719Ld09P067D04P067D101R1_068.ab1       11   476 (0) *
  Bypassed reads: contig1: BE517719Ld09P067D04P067D101F1_033.ab1; contig2: BE517719Ld09P067D04P067D101F1_068.ab1
  Worst pair: offset 0 
LLR breakdown: discreps: -19.8 (<20 part: 0.0 (#=0), >20:-19.8 (#=4); in HQ: -19.8, out HQ 0.0), match: 9.4  total: -10.4  413  0.94 0.00 0.00  BE517719Ld09P067D04P067D101F1_033.ab1       11   436 (0)    BE517719Ld09P067D04P067D101F1_068.ab1        1   426 (0) *

Pass: 3
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0
-10.3       0        1

Gap   # merges  # failures
 size
 0       2        0
148       0        1

Offset
  0       5 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    4

Chimera merges: 


Contig 2:  140 nodes

 72 str. conn. components

Path
    1  C BE517719Ld09P067D04P067D101R1_068.ab1   476 
  310    BE517719Ld09P067D04P067D101F1_068.ab1   112 
Contig length: old 624, new 624

Contig 1:  140 nodes

 72 str. conn. components

Path
    1  C BE517719Ld09P067D04P067D101R1_033.ab1   466 
  378    BE517719Ld09P067D04P067D101F1_033.ab1   191 
Contig length: old 623, new 623

Contig length: old 624, new 624
New start: 0 

Contig length: old 623, new 623
New start: 0