No. words: 1811; after pruning: 1759


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    
Merge:(0)    0    0.0 6.1 (1,1:277)  278  0.00 0.00 0.00  BE517719Ld10P067D04P067D101F1_066.ab1        1   278 (149)  C BE517719Ld10P067D04P067D101R1_066.ab1   (190)   278     1 *

Pass: 1
#reads  #contigs (not counting singlets)
    1      2
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.2 (2,1:268)  458  0.00 0.00 0.00  BE517719Ld10P067D04P067D101R1_066.ab1       10   468 (0)    BE517719Ld10P067D04P067D101R1_048.ab1        1   459 (7) *
Merge:(0)    0    0.0 9.5 (3,1:-14)  426  0.00 0.00 0.00  BE517719Ld10P067D04P067D101F1_066.ab1        1   427 (0)    BE517719Ld10P067D04P067D101F1_048.ab1       15   441 (9) *

Pass: 3
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       5 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  992 nodes

 230 str. conn. components

Path
    1  C BE517719Ld10P067D04P067D101R1_048.ab1   466 
   15  C BE517719Ld10P067D04P067D101R1_066.ab1   461 
   27  C BE517719Ld10P067D04P067D101R1_048.ab1   440 
  285    BE517719Ld10P067D04P067D101F1_066.ab1    88 
  289  C BE517719Ld10P067D04P067D101R1_066.ab1   187 
  377    BE517719Ld10P067D04P067D101F1_066.ab1   180 
  545    BE517719Ld10P067D04P067D101F1_048.ab1   362 
  561    BE517719Ld10P067D04P067D101F1_066.ab1   364 
  581    BE517719Ld10P067D04P067D101F1_048.ab1   398 
  609    BE517719Ld10P067D04P067D101F1_066.ab1   412 
  617    BE517719Ld10P067D04P067D101F1_048.ab1   434 
Contig length: old 633, new 633

Contig length: old 633, new 633
New start: 0