No. words: 1348; after pruning: 1309


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      3

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   87    0.0 7.5 (1,1:29)  340  0.00 0.00 0.00  BE517719Ld12P067D04P067D101F1_044.ab1       30   369 (126)    BE517719Ld12P067D04P067D101F1_093.ab1        1   340 (87) *
Merge:(0)   11    0.0 5.9 (2,1:297)  268  0.00 0.00 0.00  BE517719Ld12P067D04P067D101F1_093.ab1        1   269 (158)  C BE517719Ld12P067D04P067D101R1_044.ab1   (157)   269     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
11       1        0
87       1        0

Offset
  0       3 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    3    1

Chimera merges: 


Contig 1:  448 nodes

 161 str. conn. components

Path
    1  C BE517719Ld12P067D04P067D101R1_044.ab1   426 
  263    BE517719Ld12P067D04P067D101F1_093.ab1   106 
  493    BE517719Ld12P067D04P067D101F1_044.ab1   365 
Contig length: old 623, new 623

Contig length: old 623, new 623
New start: 0