No. words: 2158; after pruning: 2106


Histogram of relative pair offsets, for read pairs with multiple alignments:
71    10
72    12
99    30

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.8 (1,1:503)  470  0.99 0.20 0.20  BE517780Ld11P067C04P067C101F1_020.ab1        1   504 (153)  C BE517780Ld11P067C04P067C101R1_020.ab1   (184)   504     1 *
Merge:(0)    0    0.0 6.7 (2,1:134)  384  3.19 0.00 0.00  BE517780Ld11P067C04P067C101F1_020.ab1      135   573 (84)    BE517780Ld11P067C04P067C101F1_029.ab1        1   439 (0) *
Merge:(0)    0   -1.4 3.9 (3,1:291)  326  3.75 0.27 0.00  BE517780Ld11P067C04P067C101R1_020.ab1      214   586 (102)    BE517780Ld11P067C04P067C101R1_029.ab1        1   374 (0) *

Pass: 3
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0
-1.4       1        0

Gap   # merges  # failures
 size
 0       3        0

Offset
  0       4 
  1       1 
  2       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  824 nodes

 305 str. conn. components

Path
    1  C BE517780Ld11P067C04P067C101R1_020.ab1   688 
  231    BE517780Ld11P067C04P067C101F1_020.ab1    46 
  239  C BE517780Ld11P067C04P067C101R1_020.ab1   450 
  243    BE517780Ld11P067C04P067C101F1_020.ab1    58 
  247  C BE517780Ld11P067C04P067C101R1_020.ab1   442 
  251    BE517780Ld11P067C04P067C101F1_020.ab1    66 
  259  C BE517780Ld11P067C04P067C101R1_020.ab1   430 
  271    BE517780Ld11P067C04P067C101F1_020.ab1    86 
  299  C BE517780Ld11P067C04P067C101R1_020.ab1   390 
  327    BE517780Ld11P067C04P067C101F1_020.ab1   142 
  335  C BE517780Ld11P067C04P067C101R1_020.ab1   354 
  336  C BE517780Ld11P067C04P067C101R1_029.ab1   140 
  337    BE517780Ld11P067C04P067C101F1_020.ab1   152 
  351  C BE517780Ld11P067C04P067C101R1_020.ab1   338 
  356    BE517780Ld11P067C04P067C101F1_020.ab1   171 
  359  C BE517780Ld11P067C04P067C101R1_020.ab1   330 
  360    BE517780Ld11P067C04P067C101F1_020.ab1   175 
  371  C BE517780Ld11P067C04P067C101R1_020.ab1   318 
  375    BE517780Ld11P067C04P067C101F1_020.ab1   190 
  461  C BE517780Ld11P067C04P067C101R1_020.ab1   228 
  463    BE517780Ld11P067C04P067C101F1_020.ab1   278 
Contig length: old 841, new 842

Contig length: old 842, new 842
New start: 0