No. words: 2266; after pruning: 2214


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.4 (1,1:409)  396  0.00 0.24 0.24  BE517780Ld12P067C04P067C101F1_018.ab1        1   410 (168)  C BE517780Ld12P067C04P067C101R1_018.ab1   (142)   410     1 *
Merge:(0)    5    0.0 7.5 (1,1:414)  392  0.00 0.49 0.24  BE517780Ld12P067C04P067C101F1_027.ab1        1   410 (168)  C BE517780Ld12P067C04P067C101R1_027.ab1   (142)   416     6 *
Merge:(0)    0   -2.9 3.6 (2,2:2)  561  0.35 0.00 0.17  BE517780Ld12P067C04P067C101F1_018.ab1        2   578 (0)    BE517780Ld12P067C04P067C101F1_027.ab1        1   576 (2) *

Pass: 3
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0
-2.9       1        0

Gap   # merges  # failures
 size
 0       2        0
 5       1        0

Offset
  0       6 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  1294 nodes

 372 str. conn. components

Path
    1  C BE517780Ld12P067C04P067C101R1_018.ab1   552 
   12  C BE517780Ld12P067C04P067C101R1_027.ab1   548 
   20  C BE517780Ld12P067C04P067C101R1_018.ab1   533 
   68  C BE517780Ld12P067C04P067C101R1_027.ab1   492 
   72  C BE517780Ld12P067C04P067C101R1_018.ab1   481 
  128  C BE517780Ld12P067C04P067C101R1_027.ab1   432 
  156  C BE517780Ld12P067C04P067C101R1_018.ab1   397 
  192  C BE517780Ld12P067C04P067C101R1_027.ab1   368 
  200  C BE517780Ld12P067C04P067C101R1_018.ab1   353 
  390    BE517780Ld12P067C04P067C101F1_027.ab1   245 
  410  C BE517780Ld12P067C04P067C101R1_018.ab1   143 
  425    BE517780Ld12P067C04P067C101F1_018.ab1   282 
  705    BE517780Ld12P067C04P067C101F1_027.ab1   560 
Contig length: old 722, new 723

Contig length: old 723, new 723
New start: 0