No. words: 1138; after pruning: 1112


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.0 (1,1:954)  176  0.00 0.00 0.00  BE517914At02P067F04P067F101F1_065.ab1      409   591 (0)  C BE517914At02P067F04P067F101R1_065.ab1   (0)   547   365 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  90 nodes

 47 str. conn. components

Path
    1    BE517914At02P067F04P067F101F1_065.ab1     1 
  469  C BE517914At02P067F04P067F101R1_065.ab1   487 
  473    BE517914At02P067F04P067F101F1_065.ab1   473 
  481  C BE517914At02P067F04P067F101R1_065.ab1   475 
  485    BE517914At02P067F04P067F101F1_065.ab1   485 
  489  C BE517914At02P067F04P067F101R1_065.ab1   467 
  497    BE517914At02P067F04P067F101F1_065.ab1   497 
  501  C BE517914At02P067F04P067F101R1_065.ab1   455 
  513    BE517914At02P067F04P067F101F1_065.ab1   513 
  517  C BE517914At02P067F04P067F101R1_065.ab1   439 
Contig length: old 955, new 955

Contig length: old 955, new 955
New start: 0