No. words: 1261; after pruning: 1235


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    7    0.0 12.1 (1,1:670)  560  0.69 0.00 0.00  BE517914Ld03P067F04P067F101F1_041.ab1       44   626 (7)  C BE517914Ld03P067F04P067F101R1_041.ab1   (0)   628    46 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 7       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  280 nodes

 142 str. conn. components

Path
    1    BE517914Ld03P067F04P067F101F1_041.ab1     1 
  183  C BE517914Ld03P067F04P067F101R1_041.ab1   489 
  202    BE517914Ld03P067F04P067F101F1_041.ab1   202 
  270  C BE517914Ld03P067F04P067F101R1_041.ab1   402 
  274    BE517914Ld03P067F04P067F101F1_041.ab1   274 
  290  C BE517914Ld03P067F04P067F101R1_041.ab1   382 
  294    BE517914Ld03P067F04P067F101F1_041.ab1   294 
  302  C BE517914Ld03P067F04P067F101R1_041.ab1   370 
  310    BE517914Ld03P067F04P067F101F1_041.ab1   310 
  330  C BE517914Ld03P067F04P067F101R1_041.ab1   342 
  334    BE517914Ld03P067F04P067F101F1_041.ab1   334 
  342  C BE517914Ld03P067F04P067F101R1_041.ab1   330 
  346    BE517914Ld03P067F04P067F101F1_041.ab1   346 
  374  C BE517914Ld03P067F04P067F101R1_041.ab1   298 
  406    BE517914Ld03P067F04P067F101F1_041.ab1   406 
  410  C BE517914Ld03P067F04P067F101R1_041.ab1   262 
  430    BE517914Ld03P067F04P067F101F1_041.ab1   430 
  434  C BE517914Ld03P067F04P067F101R1_041.ab1   238 
  466    BE517914Ld03P067F04P067F101F1_041.ab1   466 
  482  C BE517914Ld03P067F04P067F101R1_041.ab1   190 
  486    BE517914Ld03P067F04P067F101F1_041.ab1   486 
  496  C BE517914Ld03P067F04P067F101R1_041.ab1   176 
  584    BE517914Ld03P067F04P067F101F1_041.ab1   584 
  588  C BE517914Ld03P067F04P067F101R1_041.ab1    84 
Contig length: old 671, new 671

Contig length: old 671, new 671
New start: 0