No. words: 962; after pruning: 936


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.8 (1,1:628)  284  4.50 0.00 0.00  BE517914Ld04P067F04P067F101F1_039.ab1      212   544 (0)  C BE517914Ld04P067F04P067F101R1_039.ab1   (0)   418    86 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  152 nodes

 78 str. conn. components

Path
    1    BE517914Ld04P067F04P067F101F1_039.ab1     1 
  312  C BE517914Ld04P067F04P067F101R1_039.ab1   318 
  320    BE517914Ld04P067F04P067F101F1_039.ab1   320 
  364  C BE517914Ld04P067F04P067F101R1_039.ab1   266 
  381    BE517914Ld04P067F04P067F101F1_039.ab1   381 
  409  C BE517914Ld04P067F04P067F101R1_039.ab1   221 
  413    BE517914Ld04P067F04P067F101F1_039.ab1   413 
  459  C BE517914Ld04P067F04P067F101R1_039.ab1   171 
  463    BE517914Ld04P067F04P067F101F1_039.ab1   463 
  467  C BE517914Ld04P067F04P067F101R1_039.ab1   163 
Contig length: old 629, new 629

Contig length: old 629, new 629
New start: 0