No. words: 1187; after pruning: 1161


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.2 (1,1:688)  456  2.01 0.20 0.00  BE517914Ld06P067F04P067F101F1_035.ab1       61   557 (0)  C BE517914Ld06P067F04P067F101R1_035.ab1   (0)   630   133 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  232 nodes

 118 str. conn. components

Path
    1    BE517914Ld06P067F04P067F101F1_035.ab1     1 
   68  C BE517914Ld06P067F04P067F101R1_035.ab1   623 
   76    BE517914Ld06P067F04P067F101F1_035.ab1    76 
  185  C BE517914Ld06P067F04P067F101R1_035.ab1   505 
  203    BE517914Ld06P067F04P067F101F1_035.ab1   203 
  247  C BE517914Ld06P067F04P067F101R1_035.ab1   443 
  255    BE517914Ld06P067F04P067F101F1_035.ab1   255 
  275  C BE517914Ld06P067F04P067F101R1_035.ab1   415 
  279    BE517914Ld06P067F04P067F101F1_035.ab1   279 
  307  C BE517914Ld06P067F04P067F101R1_035.ab1   383 
  311    BE517914Ld06P067F04P067F101F1_035.ab1   311 
  343  C BE517914Ld06P067F04P067F101R1_035.ab1   347 
  347    BE517914Ld06P067F04P067F101F1_035.ab1   347 
  351  C BE517914Ld06P067F04P067F101R1_035.ab1   339 
  359    BE517914Ld06P067F04P067F101F1_035.ab1   359 
  363  C BE517914Ld06P067F04P067F101R1_035.ab1   327 
  371    BE517914Ld06P067F04P067F101F1_035.ab1   371 
  383  C BE517914Ld06P067F04P067F101R1_035.ab1   307 
  391    BE517914Ld06P067F04P067F101F1_035.ab1   391 
  399  C BE517914Ld06P067F04P067F101R1_035.ab1   291 
  407    BE517914Ld06P067F04P067F101F1_035.ab1   407 
  415  C BE517914Ld06P067F04P067F101R1_035.ab1   275 
  427    BE517914Ld06P067F04P067F101F1_035.ab1   427 
  431  C BE517914Ld06P067F04P067F101R1_035.ab1   259 
  439    BE517914Ld06P067F04P067F101F1_035.ab1   439 
  463  C BE517914Ld06P067F04P067F101R1_035.ab1   227 
  479    BE517914Ld06P067F04P067F101F1_035.ab1   479 
  495  C BE517914Ld06P067F04P067F101R1_035.ab1   195 
  542    BE517914Ld06P067F04P067F101F1_035.ab1   542 
  546  C BE517914Ld06P067F04P067F101R1_035.ab1   144 
Contig length: old 689, new 689

Contig length: old 689, new 689
New start: 0 
S Change at: 474; seg lengths: entry 2, contig 2