No. words: 1046; after pruning: 1020


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 6.9 (1,1:672)  341  2.16 0.00 0.00  BE517914Ld12P067F04P067F101F1_040.ab1      131   501 (0)  C BE517914Ld12P067F04P067F101R1_040.ab1   (2)   543   173 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  168 nodes

 86 str. conn. components

Path
    1    BE517914Ld12P067F04P067F101F1_040.ab1     1 
  138  C BE517914Ld12P067F04P067F101R1_040.ab1   536 
  142    BE517914Ld12P067F04P067F101F1_040.ab1   142 
  178  C BE517914Ld12P067F04P067F101R1_040.ab1   496 
  203    BE517914Ld12P067F04P067F101F1_040.ab1   203 
  207  C BE517914Ld12P067F04P067F101R1_040.ab1   467 
  219    BE517914Ld12P067F04P067F101F1_040.ab1   219 
  251  C BE517914Ld12P067F04P067F101R1_040.ab1   423 
  255    BE517914Ld12P067F04P067F101F1_040.ab1   255 
  259  C BE517914Ld12P067F04P067F101R1_040.ab1   415 
  263    BE517914Ld12P067F04P067F101F1_040.ab1   263 
  271  C BE517914Ld12P067F04P067F101R1_040.ab1   403 
  308    BE517914Ld12P067F04P067F101F1_040.ab1   308 
  316  C BE517914Ld12P067F04P067F101R1_040.ab1   358 
  320    BE517914Ld12P067F04P067F101F1_040.ab1   320 
  324  C BE517914Ld12P067F04P067F101R1_040.ab1   350 
  328    BE517914Ld12P067F04P067F101F1_040.ab1   328 
  340  C BE517914Ld12P067F04P067F101R1_040.ab1   334 
  344    BE517914Ld12P067F04P067F101F1_040.ab1   344 
  352  C BE517914Ld12P067F04P067F101R1_040.ab1   322 
  368    BE517914Ld12P067F04P067F101F1_040.ab1   368 
  376  C BE517914Ld12P067F04P067F101R1_040.ab1   298 
  384    BE517914Ld12P067F04P067F101F1_040.ab1   384 
  400  C BE517914Ld12P067F04P067F101R1_040.ab1   274 
  404    BE517914Ld12P067F04P067F101F1_040.ab1   404 
  412  C BE517914Ld12P067F04P067F101R1_040.ab1   262 
  428    BE517914Ld12P067F04P067F101F1_040.ab1   428 
  432  C BE517914Ld12P067F04P067F101R1_040.ab1   242 
  436    BE517914Ld12P067F04P067F101F1_040.ab1   436 
  444  C BE517914Ld12P067F04P067F101R1_040.ab1   230 
  452    BE517914Ld12P067F04P067F101F1_040.ab1   452 
  464  C BE517914Ld12P067F04P067F101R1_040.ab1   210 
  472    BE517914Ld12P067F04P067F101F1_040.ab1   472 
  476  C BE517914Ld12P067F04P067F101R1_040.ab1   198 
  488    BE517914Ld12P067F04P067F101F1_040.ab1   488 
  492  C BE517914Ld12P067F04P067F101R1_040.ab1   182 
Contig length: old 673, new 673

Contig length: old 673, new 673
New start: 0 
S Change at: 134; seg lengths: entry 1, contig 1
S Change at: 247; seg lengths: entry 1, contig 1