No. words: 1678; after pruning: 1652


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.1 (1,1:679)  666  0.00 0.00 0.00  BE517914Ld13P067F04P067F101F1_086.ab1        1   680 (153)  C BE517914Ld13P067F04P067F101R1_086.ab1   (165)   680     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  342 nodes

 173 str. conn. components

Path
    1  C BE517914Ld13P067F04P067F101R1_086.ab1   845 
  197    BE517914Ld13P067F04P067F101F1_086.ab1    32 
  205  C BE517914Ld13P067F04P067F101R1_086.ab1   641 
  373    BE517914Ld13P067F04P067F101F1_086.ab1   208 
  393  C BE517914Ld13P067F04P067F101R1_086.ab1   453 
  761    BE517914Ld13P067F04P067F101F1_086.ab1   596 
  765  C BE517914Ld13P067F04P067F101R1_086.ab1    81 
  777    BE517914Ld13P067F04P067F101F1_086.ab1   612 
  785  C BE517914Ld13P067F04P067F101R1_086.ab1    61 
  813    BE517914Ld13P067F04P067F101F1_086.ab1   648 
  817  C BE517914Ld13P067F04P067F101R1_086.ab1    29 
  833    BE517914Ld13P067F04P067F101F1_086.ab1   668 
Contig length: old 998, new 998

Contig length: old 998, new 998
New start: 0