No. words: 1013; after pruning: 987


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Fail: (1)  221   -5.5 -5.5 (1,1:-33)   24  9.09 0.00 0.00  BE517914Sn29P067F04P101B081F1_034.ab1      222   254 (184)    BE517914Sn29P067F04P101B081R1_034.ab1      255   287 (288) *
  Worst pair: offset 0 
LLR breakdown: discreps: -1.1 (<20 part: -1.1 (#=3), >20:0.0 (#=0); in HQ: -1.1, out HQ 0.0), match: 0.7  trail: -2.8  lead: -2.3  total: -5.5   24  9.09 0.00 0.00  BE517914Sn29P067F04P101B081F1_034.ab1      222   254 (184)    BE517914Sn29P067F04P101B081R1_034.ab1      255   287 (288) *

Pass: 4
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-5.5       0        1

Gap   # merges  # failures
 size
221       0        1

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 2:  2 nodes

 2 str. conn. components

Path
    1    BE517914Sn29P067F04P101B081R1_034.ab1     1 
Contig length: old 575, new 575

Contig 1:  2 nodes

 2 str. conn. components

Path
    1    BE517914Sn29P067F04P101B081F1_034.ab1     1 
Contig length: old 438, new 438