No. words: 1358; after pruning: 1332


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 13.4 (1,1:638)  619  0.00 0.16 0.00  BE517914Td08P067F04P108G051F1_042.ab1        1   635 (41)  C BE517914Td08P067F04P108G051R1_042.ab1   (42)   640     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  316 nodes

 160 str. conn. components

Path
    1  C BE517914Td08P067F04P108G051R1_042.ab1   682 
   91    BE517914Td08P067F04P108G051F1_042.ab1    48 
   95  C BE517914Td08P067F04P108G051R1_042.ab1   588 
  239    BE517914Td08P067F04P108G051F1_042.ab1   196 
  243  C BE517914Td08P067F04P108G051R1_042.ab1   440 
  251    BE517914Td08P067F04P108G051F1_042.ab1   208 
  443  C BE517914Td08P067F04P108G051R1_042.ab1   240 
  523    BE517914Td08P067F04P108G051F1_042.ab1   480 
  527  C BE517914Td08P067F04P108G051R1_042.ab1   156 
  563    BE517914Td08P067F04P108G051F1_042.ab1   520 
  587  C BE517914Td08P067F04P108G051R1_042.ab1    96 
  607    BE517914Td08P067F04P108G051F1_042.ab1   564 
Contig length: old 719, new 719

Contig length: old 719, new 719
New start: 0