No. words: 1216; after pruning: 1190


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.1 (1,1:705)  493  0.00 0.00 0.20  BE517914Tu02P067F04P067F101F1_073.ab1        1   507 (0)  C BE517914Tu02P067F04P067F101R1_073.ab1   (4)   705   200 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  250 nodes

 127 str. conn. components

Path
    1  C BE517914Tu02P067F04P067F101R1_073.ab1   709 
    8    BE517914Tu02P067F04P067F101F1_073.ab1     4 
   20  C BE517914Tu02P067F04P067F101R1_073.ab1   690 
   24    BE517914Tu02P067F04P067F101F1_073.ab1    20 
   32  C BE517914Tu02P067F04P067F101R1_073.ab1   678 
   36    BE517914Tu02P067F04P067F101F1_073.ab1    32 
  272  C BE517914Tu02P067F04P067F101R1_073.ab1   439 
Contig length: old 709, new 710

Contig length: old 710, new 710
New start: 0