No. words: 1078; after pruning: 1039


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.0 (1,1:269)  262  0.00 0.37 0.00  BE517931As01P016B06B12F1_059.scf        1   270 (81)  C BE517931As01P016B06B12R1_059.ab1   (105)   271     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    1
    2    1

Chimera merges: 


Contig 1:  134 nodes

 69 str. conn. components

Path
    1  C BE517931As01P016B06B12R1_059.ab1   376 
  113    BE517931As01P016B06B12F1_059.scf     8 
  117  C BE517931As01P016B06B12R1_059.ab1   260 
  133    BE517931As01P016B06B12F1_059.scf    27 
Contig length: old 457, new 457

Contig length: old 457, new 457
New start: 0