No. words: 1354; after pruning: 1315


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.1 (1,1:277)  271  0.00 0.00 0.00  BE517931Ld07P016B06B12F1_056.scf        4   278 (182)  C BE517931Ld07P016B06B12R1_056.ab1   (159)   275     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    1
    2    1

Chimera merges: 


Contig 1:  140 nodes

 72 str. conn. components

Path
    1  C BE517931Ld07P016B06B12R1_056.ab1   434 
  167    BE517931Ld07P016B06B12F1_056.scf    11 
Contig length: old 616, new 616

Contig length: old 616, new 616
New start: 0